We investigate the cognitive and neural mechanisms underlying learning and memory using computational methods. We highly welcome bright students who would like to pursue a Bachelor/Master thesis in our group. The main language of communication is English.
A particular focus of our research is understanding the function of a brain region, called the hippocampus. It is involved in storing and retrieving episodic memories and in generating representations of space. However, it remains unclear why these two functions go together and how these functions are implemented in the hippocampus. To address these two questions, we employ a number of computational and theoretical approaches, including
The two projects described below exemplify the approach of our group.
Rodents are known to perform extremely well when navigating complex environments and to adapt rapidly to novel situations. They maneuver through dark sewers while looking for food or fleeing from predators and seem to know exactly where they are and where to go. We are modeling the spatial behavior of rodents using a robot model. A particular interesting question is how animals learn to navigate novel environments and to perform new tasks. We are studying this question using a machine learning approach called reinforcement learning. Within this framework, we implement the neural circuitry of the hippocampus to study how the neural mechanisms underlying spatial learning and navigation. For more details see the "Projects" tab above.
The Nobel Prize in Physiology or Medicine in 2014 was awarded to John O’Keefe for the discovery of place cells and to May-Britt Moser and Edvard Moser for the discovery of grid cells. Place cells are found in the hippocampus and they respond, or “spike”, when an animal is located in a particular place, called a “place field”. The timing of spiking is such that, during one cycle of the theta oscillation (8 – 12Hz), groups of place cells spike in a sequence that corresponds to the order of their place fields in space (theta sequences). Intriguingly, the same place cells also spike in sequential order afterwards, when the animal is resting or sleeping (replay sequences). We are developing neural network models to help us understand how theta and replay sequences are generated and what role they play in learning and memory.
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Speaker & projects P0, P2, and P5 |
Projects A14 & F01 | Head: Neurobiology of memory | Executive board |
Sandhiya Vijayabaskaran, M.Sc.
Dr. Mohammadreza Mohagheghi Nejad
Paul Adler
Jan Erik Bellingrath, B.Sc.
Hafssa Boutaleb
Alexander Jungeilges, M.Sc.
Zheng Hong Maoqi Zhu, B.Sc.
⁃ Pyka-Parametric-Anatomical-Modeling-2014
Parametric Anatomical Modeling is a method to translate large-scale anatomical data into spiking neural networks. PAM is implemented as a Blender addon.
LICENSE: GNU GPL v2.0
DOI: 10.5281/zenodo.3298590
PUBLICATIONS: Pyka, M., Klatt, S., Cheng, S. (2014): Parametric Anatomical Modeling: a method for modeling the anatomical layout of neurons and their projections. Frontiers in Neuroanatomy, 8, 91. http://doi.org/10.3389/fnana.2014.00091
⁃ Pyka-Pam-Utils-2014
This is a module with some helpful functions to process the data generated by PAM
License: GNU GPL v2.0
DOI: 10.5281/zenodo.3298825
PUBLICATIONS: Pyka, M., Klatt, S., Cheng, S. (2014): Parametric Anatomical Modeling: a method for modeling the anatomical layout of neurons and their projections. Frontiers in Neuroanatomy, 8, 91. http://doi.org/10.3389/fnana.2014.00091
⁃ Dynamics of Disease States in Depression
Major depressive disorder (MDD) is a disabling condition that adversely affects a person general health, work or school life, sleeping and eating habits, and person's family. Despite intense research efforts, the response rate of antidepressant treatments are relatively low and the etiology and progression of MDD remain poorly understood. To advance our understanding of MDD, we use computational modelling as described in our article.
The model to simulate the dynamics of disease states in depression can be found below.
License: GNU GPL v3.0
DOI: 10.5281/zenodo.3299247
PUBLICATIONS: Demic, S. & Cheng, S. (2014): Modeling the Disease States in Depression. PLoS ONE 9(10): e110358. https://doi.org/10.1371/journal.pone.0110358
⁃ Episodic Memory Deficits in Depression
License: GNU GPL v3.0
DOI: 10.5281/zenodo.3299871
PUBLICATIONS: Fang, J., Demic, S., & Cheng, S. (2018) The reduction of adult neurogenesis in depression impairs the retrieval of new as well as remote episodic memory, PLOS ONE, 13(6), e0198406
Our group aims to provide neuroscientific community with a collection of high-quality SVG-figures for free use in publications, presentations, websites etc. via GitHub.
All SVG-files in the repository are distributed under the terms of the Create Commons Attribution 4.0 International License.
Current available images include:
neuron density during mouse brain development focused on the comparison of neuron density in the dorsal pallidum/isocortex compared to the hippocampal formation https://github.com/MartinPyka/NeuroSVG/tree/master/Mammals/Mouse .
How does learning unfold over time? This question can be studied in experimental data and with computational modeling. We analyze behavioral and neural activity data that was collected by collaborating labs. In our theoretical work, we employ simple associative models as well as deep reinforcement learning, which allows us to study the emerging representations and to correlate them to experimental data.
Spatial navigation might appear to be a simple behavior, but closer inspection reveals that it is the complex result of many interacting sub-processes. We use deep reinforcement learning to understand how goal-directed behavior emerges in an artificial agent, how the deep neural network represents spatial information, and how the model's representations are related to neural codes for space in the hippocampus.
We study, on the one hand, how episodic memories are stored and retrieved in interaction with the sensory and semantic systems. On the other hand, we investigate how episodic memories influence these sensory and semantic systems.
There is still great uncertainty as to what episodic memory is and what function it might serve. Within the research unit FOR 2812, we are working on an interdisciplinary framework for episodic memory.
A large number of cell types in the mammalian brain code for various types of spatial information, e.g., head direction cells, place cells, and grid cells. We study how networks of these cell types could support spatial navigation by combining computational modeling and data analysis.
The CRISP theory suggests that episodic memories are best represented by neuronal sequences and specific mechanisms by which sequences are stored and retrieved from the hippocampal circuit. Using neural network models, we investigate under which conditions the hippocampal circuit can perform the hypothesized functions reliably and robustly.
